| 25 Jun 2026 | EU | Cadmium on mangosteen from Indonesia | Cadmium | Alert · serious |
| 1 Dec 2025 | JP | 加熱後摂取冷凍食品（凍結直前未加熱）：豆類の調整品（FROZEN TEMPEH（テンペ)）
CV.INJAPAN LINK INDONESIA | E. coli | Border rejection · Destroyed |
| 14 Nov 2025 | EU | Salmonella agona in Coconut from Indonesia | Salmonella | Information · serious |
| 27 Oct 2025 | EU | foreign body (plastic and metal pieces) in desiccated coconut from Indonesia | Foreign bodies | Information · potentially serious |
| 26 Sep 2025 | JP | 加熱後摂取冷凍食品（凍結直前未加熱）：その他の野菜の調整品（FROZEN CASSAVA LEAVES）
CV. IN JAPAN LINK INDONESIA | E. coli | Border rejection |
| 26 Sep 2025 | JP | 加熱後摂取冷凍食品（凍結直前未加熱）：その他の野菜の調整品（FROZEN PAPAYA LEAVES）
CV. IN JAPAN LINK INDONESIA | E. coli | Border rejection |
| 26 Sep 2025 | JP | 加熱後摂取冷凍食品（凍結直前未加熱）：果実の調整品（FROZEN YOUNG JACKFRUIT(NANGKA)）
CV. IN JAPAN LINK INDONESIA | E. coli | Border rejection |
| 29 Aug 2025 | JP | 加熱後摂取冷凍食品（凍結直前未加熱）：豆類の調整品（SAMFOOD TEMPE）
CV.ZANADA CORPORATION | E. coli | Border rejection · Destroyed |
| 29 Aug 2025 | JP | 生鮮カカオ豆
CV JAPANINDO LESTARI | Pesticide residues | Border rejection · Destroyed |
| 1 Aug 2025 | EU | Iprodione and prochloraz in mangosteens from Indonesia | Pesticide residues | Information · potential risk |
| 27 Feb 2025 | JP | 加熱後摂取冷凍食品（凍結直前未加熱）：果実の調整品（FROZEN BOILED YOUNG JACKFRUIT）
PT ASHA NUOVA INTERNASIONAL INDONESIA | Microbial contamination (other) | Border rejection · Destroyed |
| 27 Feb 2025 | JP | 加熱後摂取冷凍食品（凍結直前未加熱）：その他の野菜の調整品(FROZEN BOILED CASSAVA LEAVES)
PT ASHA NUOVA INTERNASIONAL INDONESIA | Plant and marine toxins | Border rejection · Destroyed |
| 27 Feb 2025 | JP | 加熱後摂取冷凍食品（凍結直前未加熱）：豆類の調整品（テンペ（TEMPE））
RUMAH TEMPE AZAKI | E. coli | Border rejection · Destroyed |
| 15 Nov 2024 | EU | salmonella in fine grade coconut, from Indonesia | Salmonella | Alert · serious |
| 30 Oct 2024 | EU | Excess of Cypermethrin and Difenoconazole in rambutan from Indonesia | Pesticide residues | Alert · serious |
| 24 Oct 2024 | JP | 無加熱摂取冷凍食品：えだまめ（FROZEN SOY BEANS(SLB)）
P.T. MITRA TANI DUA TUJUH | Coliforms | Border rejection · Re-exported |
| 14 Mar 2024 | EU | Unauthorised substances acephate, methamidophos and triazophos in dragon fruit from Indone | Pesticide residues | Information · not serious |
| 5 Feb 2024 | EU | Cadmium in mangistan | Cadmium | Information · serious |
| 12 Apr 2023 | EU | sulphite (193.1 mg/kg - ppm) undeclared on organic coconut sugar from Indonesia, processed | Undeclared allergen | Alert · serious |
| 21 Sep 2021 | AU | Soybeans in pod
Pt Mitratani Dua Tujuh | Pesticide residues
0.08 mg/kg | Border rejection |
| 22 Jul 2021 | AU | Edamame soybeans in pod
Pt Mitratani Dua Tujuh | Pesticide residues
0.08 mg/kg | Border rejection |
| 22 Feb 2019 | EU | food - official control on the market - alert notification - Grated coconut - Mislabelled | Documents and labelling | Alert · serious |